Основні публікації
| Публікації кафедри фізичної хімії (2020-2024)
1. Tariq, S.S.; Zia, K.; Nur-e-Alam, M.; Nerukh, D.; Farafonov, V. S.; Ul-Haq, Z. Impact of mutations in SARS-CoV-2 recombinant sub-variant XBB.1.16 on the binding affinity with human ACE2 receptor. J. Mol. Graph. Model. 2024, 131, 108813. DOI: 10.1016/j.jmgm.2024.108813 2. Bakumenko, M.; Bardik, V.; Farafonov, V.; Nerukh, D. The Multiscale hybrid method with a localized constraint: II. Hybrid equations of motion based on variational principles. Ukr. J. Phys. 2024, 69(4), 269-277. DOI: 10.15407/ujpe69.4.269 3. Farafonov, V. S.; Stich, M.; Nerukh, D. A. Complete Virion Simulated: All-Atom Model of an MS2 Bacteriophage with Native Genome. J. Chem. Theory Comput. 2023, 19(21), 7924-7933. DOI: https://doi.org/10.1021/acs.jctc.3c00846 4. Kriklya N., Popirny, М., Malyshev A., Roshal A. Particles micro- and nanosize distribution and spectroscopic study of humicacid solution. Chemical Technology and Engineering ‒ 2023: Monograph. (Atamanyuk V.M. et al., Eds.) - Lviv: Rastr-7, 2023. - p.81-90. ISBN 978-617-8296-99-5. DOI: doi.org/10.23939/cte 5. Elena A. Reshetnyak, Nika N. Kriklya, Polina I. Kabatskaya, Anna I. Risukhina Protolytic properties of methyl yellow both in water-ethanol medium and in hardened gelatin gel with the presence of sodium dodecylsulphate and tetrabutylammonium chloride. Journal of Molecular Liquids. - 2024. - Vol. 401. - p. 124579 (1-11). https://doi.org/10.1016/j.molliq.2024.124579 6. Anna Laguta, Natalya Vodolazkaya, Dmitry Nerukh The Spectrophotometric Determination of the Patchy Surface Potential of Viruses Using pH-Sensitive Molecular Probes // J. Chem. Educ. - 2024. - Vol. 101. No. 3 - P. 1190-1197. doi.org/10.1021/acs.jchemed.3c00948 7. Mchedlov-Petrossyan, N.O.; Marfunin, M.J.; Kriklya, N.N. Colloid Chemistry of Fullerene Solutions. Liquids. 2024, 4, 32-72. https://doi.org/10.3390/liquids4010002 8. D. Glibitskiy, O. Gorobchenko, O. Nikolov, T. Cheipesh, T. Dzhimieva, I. Zaitseva, A. Roshal, M. Semenov, G. Glibitskiy. Influence of aluminum and iron chlorides on the parameters of zigzag patterns on films dried from BSA solutions. Scientific reports. 2023. Vol. 13. 9426 https://doi.org/10.1038/s41598-023-36515-4 9. A. Glamazda; E. Usenko; A. Svidzerska; V. Valeev; A. Laguta; S. Petrushenko; V. Karachevtsev. DNA-TIO2 nanoparticle nanoassembies: effect of temperature and nanoparticles concentration on aggregation. J Nanopart Res 25, 113 (2023). 10. Д. В. Харченко, В. С. Фарафонов, T. О. Чейпеш, М. О. Мчедлов-Петросян, Р. В. Родик, В. І. Кальченко. Каталітичний ефект каліксарену з холіновими групами. Теор. Експ. Хімія. 2022, 58, № 5, 324-330. (D. V. Kharchenko, V. S. Farafonov, T. A. Cheipesh, N. O. Mchedlov-Petrossyan, R. V. Rodik, V. I. Kalchenko. Catalytic properties of calixarene bearing choline groups in the processes of ester hydrolysis. Theoretical and Experimental Chemistry, 2022. Vol. 58, No. 5, 363-371. https://doi.org/10.1007/s11237-023-09752-x ). 11. Mchedlov-Petrossyan, N.O.; Farafonov, V.S.; Lebed, A.V. Solvatochromic and Acid-Base Molecular Probes in Surfactant Micelles: Comparison of Molecular Dynamics Simulation with the Experiment (a Review). Liquids 2023, 3, 314-370, https://doi.org/10.3390/liquids3030021 12. S. V. Shekhovtsov, I. V. Omelchenko, S. V. Shishkina, A. O. Doroshenko, K. O. Vus, H. S. Vlasenko, N. O. Mchedlov-Petrossyan. 3′-Nitro- and 3′-Aminofluoresceins: Appearance of Previously Missing Dyes. Colorants, 2023, 2, 500-518. https://doi.org/10.3390/colorants2030024 13. N. Vodolazkaya, A. Laguta, V. Farafonov, M. Nikolskaya, Z. Balklava, R. Khayat, M. Stich, N. Mchedlov-Petrossyan, D. Nerukh. Influence of various colloidal surfactants on the stability of MS2 bacteriophage suspension. The charge distribution on the PCV2 virus surface. J. Mol. Liquids 2023, vol. 387, 122644 https://doi.org/10.1016/j.molliq.2023.122644 14. N. O. Mchedlov-Petrossyan, T. A. Cheipesh, E. G. Moskaeva, S. V. Shekhovtsov, K. I. Ostrovskyi. Towards understanding of stepwise acid-base dissociation in systems inclined to tautomerism: Nitro derivatives of fluorescein in dimethyl sulfoxide. J. Mol. Liquids, 2023. 122540. https://doi.org/10.1016/j.molliq.2023.122540 15. V. S. Farafonov, A. V. Lebed, D. A. Nerukh, N. O. Mchedlov-Petrossyan. Estimation of Nanoparticle's Surface Electrostatic Potential in Solution Using Acid-Base Molecular Probes I: In Silico Implementation for Surfactant Micelles. J. Phys. Chem. B 2022, 126. https://doi.org/10.1021/acs.jpcb.2c07028 16. A.N. Laguta, N.O. Mchedlov-Petrossyan, S.M. Kovalenko, T.O. Voloshina, V.I. Haidar, D.Yu. Filatov, P.V. Trostyanko, V.L. Karbivski, S.I. Bogatyrenko, L. Xu, Liyuan, O.V. Prezhdo. Stability of Aqueous Suspensions of COOH-decorated Carbon Nanotubes to Organic Solvents, Esterification, and Decarboxylation. J. Phys. Chem. Lett. 2022. https://doi.org/10.1021/acs.jpclett.2c02902 17. N.O. Mchedlov-Petrossyan, S.V. Shekhovtsov, E.G. Moskaeva, I.V. Omelchenko, A. D. Roshal, A.O. Doroshenko. New fluorescein dyes with unusual properties: Tetra- and pentanitrofluoresceins. J. Mol. Liquids. 2022 https://doi.org/10.1016/j.molliq.2022.120541 18. V. S. Farafonov, A. V. Lebed, D. A. Nerukh, N. O. Mchedlov-Petrossyan. Estimation of nanoparticle's surface electrostatic potential in solution using acid-base molecular probes II: Insight from atomistic simulations of micelles. J. Phys. Chem. B. 2022, 126. https://doi.org/10.1021/acs.jpcb.2c07028 19. N. Vodolazkaya, M. Nikolskaya, A. Laguta, V. Farafonov, Z. Balklava, M. Stich, N. Mchedlov-Petrossyan, D. Nerukh. Estimation of nanoparticle's surface electrostatic potential in solution using acid-base molecular probes III: Experimental hydrophobicity/hydrophilicity and charge distribution of MS2 virus surface. J. Phys. Chem. B. 2022. V. 126, 8166-8176. https://doi.org/10.1021/acs.jpcb.2c04491 20. N. O. Mchedlov-Petrossyan, N. N. Kriklya, A. N. Laguta, E. Ōsawa. Stability of detonation nanodiamond colloid with respect to inorganic electrolytes and anionic surfactants and solvation of the particles surface in DMSO-H2O organo-hydrosols. Liquids 2022. V. 2. 196-209. https://doi.org/10.3390/liquids2030013 21. T. A. Cheipesh, N. O. Mchedlov-Petrossyan, L. N. Bogdanova, D. V. Kharchenko, A. D. Roshal, N. A. Vodolazkaya, Yu. V. Taranets, S.V. Shekhovtsov, R.V. Rodik, V.I. Kalchenko. Aggregates of cationic calix[4]arenes in aqueous solution as media for governing protolytic equilibrium, fluorescence, and kinetics. J. Mol. Liquids. 2022. V. 366. 119940. https://doi.org/10.1016/j.molliq.2022.119940 22. N. O. Mchedlov-Petrossyan, M. O. Marfunin, V. A. Tikhonov, S. V. Shekhovtsov. Unexpected Colloidal Stability of Fullerenes in Dimethyl Sulfoxide and Related Systems. Langmuir. 2022, V 38, no. 32, P. 10000-10009. DOI: 10.1021/acs.langmuir.2c01408 23. В. С. Фарафонов, О. В. Лебідь, М.О. Мчедлов-Петросян. Локалізація гідрофобних та ксантенових кислотно-основних індикаторів у міцелах. Теор. Експ. Хімія 2022, Т. 58. № 3. С. 163-170. 24. O.V. Tomchuk, N.O. Mchedlov-Petrossyan, O.A. Kyzyma, N.N. Kriklya, L.A. Bulavin, Y. L. Zabulonov, O. I. Ivankov, V. M. Garamus, E. Ōsawa, M.V. Avdeev. Cluster-cluster interaction in nanodiamond hydrosols by small-angle scattering. J. Mol. Liquids. 2022. V. 354, 118816. https://doi.org/10.1016/j.molliq.2022.118816 25. O.M. Obukhova, N.O. Mchedlov-Petrossyan, N.A. Vodolazkaya, L.D. Patsenker, A. O. Doroshenko Stability of Rhodamine Lactone Cycle in Solutions: Chain-Ring Tautomerism, Acid-Base Equilibria, Interaction with Lewis Acids, and Fluorescence. Colorants. 2022, 1(1), 58-90; https://doi.org/10.3390/colorants1010006 26. E. Usenko, A, Glamazda, V. Valeev, A. Svidzerska, A. Laguta, S. Petrushenko, V. Karachevtsev. Effect of TiO2 nanoparticles on the thermal stability of native DNA under UV irradiation. Applied Physics A. 2022. 128, 900 https://doi.org/10.1007/s00339-022-06043-5 27. E. G. Moskaeva, K. I. Ostrovskiy, S.V. Shekhovtsov, N.O. Mchedlov-Petrossyan. Transmittance of electronic effects in the fluorescein molecule: Nitro and amino groups in the phthalic acid residue. Вісник Харківського університету. 2021, 36 (59) С. 24-32. https://doi.org/10.26565/2220-637X-2021-36-05 28. M. O. Marfunin, V. K. Klochkov, P. M Radionov, N. O. Mchedlov-Petrossyan. Hydrosol of C70 fullerene: synthesis and stability in electrolytic solutions. Укр. хім. журн. 2021. Т. 87. № 10. С. 63-73. doi: 10.33609/2708-129X.87.10.2021.63-73 29. S. V. Shekhovtsov, E. H. Shvets, M. A. Kolosov, I. V. Omelchenko, A. S. Batrak, N. O. Mchedlov-Petrossyan. Peculiarities of the 4,5-dinitrofluorescein esters synthesis: Formation of reduced species. Coloration Technol. 2021. Doi:10.1111/cote.12582. 30. A.N. Laguta, S. V. Eltsov, N. O. Mchedlov-Petrossyan. Nitrophenol violet as a new tool for studying of kinetics of reactions in solutions. J. Chem. Educ. 2021, Vol. 98. No. 9. P. 2964-2972. https://doi.org/10.1021/acs.jchemed.9b00115. 31. N.N. Kriklya, T.Y. Gromovoy, N.O. Mchedlov-Petrossyan. 4,5-Dinitrosulfonefluorescein and related dyes: Kinetics of reversible rupture of the pyran ring and their interaction with lysozyme. Coloration Technol. 2021;00:1-10. https://doi.org/10.1111/cote.12565 32. N. O. Mchedlov-Petrossyan, M. O. Marfunin. Formation, Stability, and Coagulation of Fullerene Organosols: C70 in Acetonitrile-Toluene Solutions and Related Systems. Langmuir. 2021. V. 37. No. 23. P. 7156-7166. https://doi.org/10.1021/acs.langmuir.1c00722. 33. N. O. Mchedlov-Petrossyan, N. A. Vodolazkaya. Protolytic Equilibria in Organized Solutions: Ionization and Tautomerism of Fluorescein Dyes and Related Indicators in Cetyltrimethylammonium Chloride Micellar Solutions at High Ionic Strength of the Bulk Phase. Liquids. 2021. 1, P. 1-24. https://doi.org/10.3390/liquids1010001 34. A.P. Kryshtal, N.O. Mchedlov-Petrossyan, A.N. Laguta, N.N. Kriklya, A. Kruk, E. Osawa Primary detonation nanodiamond particles: their core-shell structure and the behavior in organo-hydrosols. Colloids and Surfaces A: Physicochemical and Engineering Aspects. 2021. Vol. 614. 126079. https://doi.org/10.1016/j.colsurfa.2020.126079 35. O.A. Kyzyma, N.O. Mchedlov-Petrossyan, Y. Turki Mahmood Al-Shuuchi, T.V. Tropin, O.I. Ivankov, N.N. Kriklya, T.Yu. Gromovoy, A.P. Kryshtal, A.N. Zhigunov, E.A. Korosteleva, S.V. Shekhovtsov, V.M. Garamus, L.A. Bulavin. Diluted and concentrated organosols of fullerene C60 in the toluene-acetonitrile solvent system as studied by diverse experimental methods. Fullerenes, Nanotubes and Carbon Nanostructures. 2021. Vol. 29. No. 4. P. 315-330. https://doi.org/10.1080/1536383X.2020.1841752 36. K. V. Gensh, Yu. E. Zevatskii, D.V. Samoylov, S.V. Shekhovtsov, A. V. Lebed, S.T. Goga, N.O. Mchedlov-Petrossyan. Ionic Equilibrium in Mixtures of Polar Protophobic and Protophilic Non-Hydrogen Bond Donor Solvents: Acids, Salts, and Indicators in Acetonitrile with 4 mass % Dimethylsulfoxide. J. Mol. Liquids. 2021. V. 322. 114560. https://doi.org/10.1016/j.molliq.2020.114560 37. T.A. Cheipesh, D.V. Kharchenko, Yu.V. Taranets, R.V. Rodik, N.O. Mchedlov-Petrossyan, M.M. Poberezhnyk, V.I. Kalchenko. Reaction rates in aqueous solutions of cationic colloidal surfactants and calixarenes: Acceleration and resolution of two steps of fluorescein diesters hydrolysis. Colloids and Surfaces A: Physicochemical and Engineering Aspects. 2020. https://doi.org/10.1016/j.colsurfa.125479. 38. V. S. Farafonov, A. V. Lebed, N. O. Mchedlov-Petrossyan. Computing pKa shifts using traditional molecular dynamics: Example of acid-base indicator dyes in organized solutions. J. Chem. Theory Comput. 2020. Vol. 16. No. 9. 5852-5865. https://doi.org/10.1021/acs.jctc.0c00231. 39. K. Vus, U. Tarabara, Z. Balklava, D. Nerukh, M. Stich, A. Laguta, N. Vodolazkaya, N. Mchedlov-Petrossyan, V. Farafonov, N. N Kriklya (Kamneva), G. P. Gorbenko, V. Trusova, O. Zhytniakivska, A. Kurutos, N. Gadjev, T. Deligeorgiev. Association of novel monomethine cyanine dyes with bacteriophage MS2: a fluorescence study. J. Molecular Liquids. 2020. https://doi.org/10.1016/j.molliq.2020.112569 40. V.S. Farafonov, A.V. Lebed, N.L. Khimenko, N.O. Mchedlov-Petrossyan. Molecular dynamics study of an acid-base indicator dye in triton X-100 non-ionic micelles. Voprosy khimii i khimicheskoi tekhnologii, 2020. No. 1. P. 97-103. 41. N. O. Mchedlov-Petrossyan Fullerenes in aqueous media: A review. Theoretical and Experimental Chemistry, 2020. Vol. 55. No. 6. P. 361-391.https://doi.org/10.1007/s11237-020-09630-w 42. V. Tkachenko, V. V.; Farafonov, V. S.; Tokarev, V. V.; Tkachenko, I. G. Study of the effectiveness of various cannabinoid receptor 1 (CB1) agonists using molecular docking and molecular dynamics modeling. Fr.-Ukr. J. Chem. 2020, 8 (1), 76-87. DOI: 10.17721/fujcV8I1P76-87 43. Bondarev N.V. Computer Analysis of Stability of Cation Complexes with Ionophore Antibiotics // Russ. J. Gen. Chem. 2020, Vol. 90, N 8 P. 1474-1482. doi 10.1134/S1070363220080149 44. Bondarev N.V. Exploratory, Regression, and Neural Network Analysis of the Stability of Cation Coronates in Selected Pure Solvents // Russ. J. Gen. Chem. 2020, Vol. 90, N 10. P. 1906-1920. doi 10.1134/S107036322010014X 45. Sharoyko, V.; Iamalova, N. R.; Ageev, S. V.; Meshcheriakov, A. A.; Iurev, G. O.; Petrov, A. V.; Nerukh, D. A.; Farafonov, V. S.; Vasina, L. V.; Penkova, A. V.; Semenov, K. N. In Vitro and In Silico Investigation of Water-Soluble Fullerenol C60(OH)24: Bioactivity and Biocompatibility. J. Phys. Chem. B 2021, 125, 9197-9212, DOI: 10.1021/acs.jpcb.1c03332 46. Li, F.; Korotkin, I.; Farafonov, V.; Karabasov, S. Lateral migration of peptides in transversely sheared flows in water: An atomistic-scale-resolving simulation. J. Mol. Liq. 2021, 337, 116111, DOI: 10.1016/j.molliq.2021.116111 47. Wu, Y.; Okesola, B. O.; Xu, J.; Korotkin, I.; Berardo, A.; Corridori, I.; di Brocchetti, F. L. P.; Kanczler, J.; Feng, J.; Li, W.; Shi, Y.; Farafonov, V.; Wang, Y.; Thompson, R. F.; Titirici, M.-M.; Nerukh, D.; Karabasov, S.; Oreffo, R. O. C.; Rodriguez-Cabello, J. C.; Vozzi, G.; Azevedo, H. S.; Pugno, N. M.; Wang, W.; Mata, A. Disordered protein-graphene oxide co-assembly and supramolecular biofabrication of functional fluidic devices. Nat. Commun., 2020, 11, 1182. DOI: 10.1038/s41467-020-14716-z 48. V. S. Farafonov, A. V. Lebed, N. O. Mchedlov-Petrossyan. Continuum electrostatics investigation of ionic micelles using atomistic models. Ukrainian Chem J. 2021. V. 87. No. 6. P. 55-69. doi: 10.33609/2708-129X.87.06.2021.55-70 49. E.G. Moskaeva, A.V. Mosharenkova, S.V. Shekhovtsov, N.O. Mchedlov-Petrossyan. Protolytic equilibrium of tetra- and pentanitrofluoresceins in a binary solvent acetonitrile - dimethyl sulfoxide (mass ratio 96 : 4). Ukrainian Chem J. 2021. V. 87. No. 5. P. 25-37. http:/ucj.org.ua/10.33609/2708-129X.87.05.2021.25-37. 50. Farafonov, V. S.; Lebed, A. V. Nitroxyl spin probe in ionic micelles: A molecular dynamics study. Kharkov Univ. Bull., Chem. Ser. 2020, 34, 57-64, DOI: 10.26565/2220-637X-2020-34-02 51. Органофілізовані шаруваті силікати для сорбційного вилучення сполук урану (VI) з мінералізованих вод // І.А. Ковальчук, А.М. Лагута, Б.Ю. Корнілович, В.Ю. Тобілко // Хімія, фізика та технологія поверхні. - 2020. - Т. 11. - № 2. - С. 215-227. 52. Н. О. Мчедлов-Петросян, О. Н. Безкровная, Н. А. Водолазкая. Функционализированные pH-чувствительными красителями полимерные пленки Ленгмюра-Блоджетт. Хімія, Фізика та Технологія Поверхні. 2020. Т. 11. № 1. C. 72-99. |